Plant MITE

SE3820564

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8882
Solanum tuberosum
SE3820564
Mutator
M3
chr08:34847374-34847736
AAATAAAAA
GGGAAAAATGACAAATATGCCCCTGAACTATCATAAATGGTATGCAGATACCCTTTGTCATACTTTTGGGACATTGGTGTCCCTGCCATCCAAAAACTAGAGCATATATGCCCTT

Secondary structure and sequence

TSD TIR

5'

3'

 AAATAAAAA        T                       A                                                      A                           CACT    C   AGACTAAATAGGG       G  C           T AAT  A      A
          GGGAAAAA GACAAATATGCCCCTGAACTATC TAAATGGTATGCAGATACCCTTTGTCATACTTTTGGGACATTGGTGTCCCTGCC TCCAAAAACTAGAGCATATATGCCCTT    CTAA GGA             ACACGTG CA AATCTTATCCG C   CC ATATTT 
          |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    |||| |||             ||||||| || ||||||||||| |   || |||||| A
          CCCTTTTT CTGTTTATATGGGGGCTTGATAG ATTTACCATACGTCTATGGGAGGCAGTATGAAAACTCTGTAACCACGGGGACGG AGGTTTTTGATCTCGTATATATGGGAA    GATT CCT             TGTGCAC GT TTAGAATAGGT G   GG TGTAAA 
AAAAAATAAA        C                       C                                                      C                           ATAT    A   ----------GTA       A  A           - GCT  C      T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820564

AAATAAAAAGGGAAAAATGACAAATATGCCCCTGAACTATCATAAATGGTATGCAGATACCCTTTGTCATACTTTTGGGACATTGGTGTCCCTGCCATCCAAAAACTAGAGCATATATGCCCTTCACTCTAACGGAAGACTAAATAGGGACACGTGGCACAATCTTATCCGTCAATCCAATATTTAATAAATGTCGGTCGGTGGATAAGATTATGACACGTGTATGTCCATTAGTATAAAGGGTATATATGCTCTAGTTTTTGGACGGCAGGGGCACCAATGTCTCAAAAGTATGACGGAGGGTATCTGCATACCATTTACGATAGTTCGGGGGTATATTTGTCCTTTTTCCCAAATAAAAAA

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