SE3840572

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8890
  • Solanum tuberosum
  • SE3840572
  • CACTA
  • Ca4
  • chr04:53308591-53309071
  • TAA
  • ACACTCTGTTTGGATCATTGTTACCCATTGTATTGTATTGTATCGTTACTATACGTGC

Secondary structure and sequence

TSD    TIR
5'



3'
TA                       C --------   --               C  T   A  -C    -AA      T TTGATTGTTACTTAAAATTTATTGTATTGTATTGTTAAATTATGTTGTTACGTAACAATGAAAACCCCCATTTTATGGAACAACCAATTTGGTGTGTTTCTATTGTTACTTAATTTCTTTTTCCAATTATATCTTTACATAATATTTCATAATACTATTTTACCC
  ACACTCTGTTTGGATCATTGTTA C        CAT  TGTATTGTATTGTAT GT ACT TA  GTGC   TGTTTG T                                                                                                                                                                     
  ||||||||||||||||||||||| |        |||  ||||||||||||||| || ||| ||  ||||   |||||| |                                                                                                                                                                     T
  TGTGAGACAAACCTAGTAACAAT G        GTA  ACATAACATAACATA CA TGA AT  CATG   TAACAT A                                                                                                                                                                     
AA                       A TTAACAAA   TT               A  -   A  AA    ACA      - CCATCTATGTTACAAACCGATCTGACATAACAAATTACAACAAATTATTGTAAAAATAACAAACTAAACTGACATAGTATAACATAATATTAAATATTTAAATGATTTTATAGGAATTAATAAGATCCCATCCTCCAAACTGATCTTAATTTATTATGTTACATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End