Plant MITE

SE3810578

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8896
Solanum tuberosum
SE3810578
Tc1/Mariner
St1
chr05:55628395-55628658
TA
TACTCCCTCTGTCCCTAATTACTTGTCCACTTTT

Secondary structure and sequence

TSD TIR

5'

3'

     C  CTG                       GAATTGACAC        AGAAAA       TGACATAGTGAGTTTACCATTTTATCCCTATTAATTATGAAGTGGATGAAAAGTTCTACATTTTTCAA
TACTC CT   TCCCTAATTACTTGTCCACTTTT          ACTTATTA      CAATTAA                                                                    
||||| ||   |||||||||||||||||||||||          ||||||||      |||||||                                                                     
ATGAG GA   AGGGATTAATGAACAGGTGAAAA          AACAGGGA      TGAACAG                                                                    
     A  AAA                       GGAAAATATC        --TTAA       GTAAAACTGTTTAGTTCTTTCCTGTTAAAAAAAATGGATAATATAGGAGTTAATTTACTGATTAATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810578

TACTCCCTCTGTCCCTAATTACTTGTCCACTTTTGAATTGACACACTTATTAAGAAAACAATTAATGACATAGTGAGTTTACCATTTTATCCCTATTAATTATGAAGTGGATGAAAAGTTCTACATTTTTCAAAGTAATTAGTCATTTAATTGAGGATATAATAGGTAAAAAAAATTGTCCTTTCTTGATTTGTCAAAATGGACAAGTAATTAGGGACAACTATAAAAGGAAAAGTGGACAAGTAATTAGGGAAAAAGAGAGTA

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