SE3850580

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8898
  • Solanum tuberosum
  • SE3850580
  • PIF/harbinger
  • To6
  • chr06:31787379-31787775
  • TTA
  • AGGGGTCGTTTGGTGTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT              G   --   ATAATACCAAATAGTCCTGGGATTAAATTATAGTACCACTTAATTTGTTGTTTGGTTGGCAAGTTCGGGATAATTTATCCCGGGATTAATAATTAATACTGGGATAAGTTATCCCTCCCATTGGGTGGTATAGTAATCCCGGGATAAGTTATCCCGCGATAAAATAAGTAAATG
  AGGGGTCGTTTGGT TGA  AGG                                                                                                                                                                              
  |||||||||||||| |||  |||                                                                                                                                                                              A
  TCCCCAGCAAACCA ACT  AGT                                                                                                                                                                              
AT              A   TA   TCAATACTACCCTATTTAATACTACCCTATTCAATACTACCCTAATAAAAAATAATTCATAAACCAAGCAACATAAGTTTTATTATTTAAAATTCTTGTTAAATAAACAAATGTTTTTACGGGAAGTACTTACATTTTTCACTACATTGTTTTCCCAACTTTCTCTGTAAAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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