Plant MITE

SE3810582

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8900
Solanum tuberosum
SE3810582
Tc1/Mariner
St13
chr01:4549687-4549937
TA
TACTCCCTCCGTTTCAAAAAGAATGGTCTAGT

Secondary structure and sequence

TSD TIR

5'

3'

         C              G          CA  ----   -- TCTGTTTAAAAAAGAATGGCCCATTTTCATTTTTGACAACATTTTAATTTCAACTTTCCACGTGACATGTTTAAGGCCAC
TACTCCCTC GTTTCAAAAAGAAT GTCTAGTTTC  TT    TTA  G                                                                                
||||||||| |||||||||||||| ||||||||||  ||    |||  |                                                                                A
ATGAGGGAG CAAAGTTTTTCTTA CAGATCAAAC  TG    TTG  T                                                                                
         A              A          --  AACC   CT TAAATTCTTTTCTTTTCTGAAAAATTAGAACACCAAGATTTAATTTCAATACAGTTTACATGGTTTTACAGGAAATTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810582

TACTCCCTCCGTTTCAAAAAGAATGGTCTAGTTTCCATTTTAGTCTGTTTAAAAAAGAATGGCCCATTTTCATTTTTGACAACATTTTAATTTCAACTTTCCACGTGACATGTTTAAGGCCACAATATTAAAGGACATTTTGGTACATTTGACATAACTTTAATTTAGAACCACAAGATTAAAAAGTCTTTTCTTTTCTTAAATTTCGTTCCAAGTCAAACTAGACAATTCTTTTTGAAACAGAGGGAGTA

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