SE3850583

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8901
  • Solanum tuberosum
  • SE3850583
  • PIF/harbinger
  • To5
  • chr01:80490611-80491054
  • TAA
  • AGGGGTCGTTTGGTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                A    ATAAAAATAATACCCAATAGAGTGTATTAGTAATGCATGTATTAATAATACTTGTATTAGTTATGCATAGATTATTTTTATGCATTGTTTGGTTTGGTGTATTAAAAATAGTATGCATTGTATAAAAATATATATTTACAAAAGTATCCTTCACAATTATGGTGGAAAAGATGTAAAAGTACTTTTGAGGGGTAATTGG
  AGGGGTCGTTTGGTAG GTAT                                                                                                                                                                                                       
  |||||||||||||||| ||||                                                                                                                                                                                                       G
  TCCCCAGCAAACCATC TCAC                                                                                                                                                                                                       
AA                -    ATAATCGTTTTTATTACGTACGTAATTAATATACATAACCATTAGGAACAAACCACGATAAAAAAAGTAACGATACATATTGATTACGTTCGTAATCAATATGTGAGATAACACATAACTCCTCACATAATGATTATGGTACCTAAAGATCCATAATCATTACGTTTCCTAAATTATGTACGTAATTATACCAATTTCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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