SE3830584

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8902
  • Solanum tuberosum
  • SE3830584
  • hAT
  • Hat10
  • chr05:3064240-3064691
  • ACTAGAGT
  • ACTAGAGTCTAAGTTGCTCAGACTC

Secondary structure and sequence

TSD    TIR
5'



3' 
   AG           C  A     -------GG    CCGATACGGGTGCAGATCTAGAGGTTGGATCCTTCATGATCAAATTTTTAAGATTCGGGGATATGGATCCATGTATGGATATGGGTGCGGAGATTCGCCTAAAAATAAATAAAATATCTAAAAATAGAGTTATAAAACCTAAATTATGAGATATTATGAGGAGAATCTTGGAATGAGATTAAAGGAAAAGG
ACT  AGTCTAAGTTG TC GACTC         GTGT                                                                                                                                                                                               
|||  ||||||||||| || |||||         ||||                                                                                                                                                                                               A
TGA  TCAGATTCAAC AG CTGAG         CCAC                                                                                                                                                                                               
   GA           A  C     AAGTGAAAA    GGCGTGGGCACAGCTGTGCTATACCCACACCCACACCCTAGGCACAGGTTAAACCAGTTGGTTAAAACCCATGAAACTGGTTTTAGCTACCCCTTTCAGGCCTGTCAAAATTACTAAAGACATTAGTTATGTTTTCGATTCCACTTTAACTTCTTATAACTTATGGAAAATATATCTTTAAAGATACAGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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