Plant MITE

SE3840585

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8903
Solanum tuberosum
SE3840585
CACTA
Ca1
chr07:45420955-45421179
ATA
TAAAAATGATCTTTAGCTGCAATTAATTAACGGTAATAG

Secondary structure and sequence

TSD TIR

5'

3'

ATACACTACAT          C            T   TA   --G      --CTTT        TAAATATATATTTTTAGCGGCAATTAACACTCTTTATATGTGTCCCTA
           TAAAAATGAT TTTAGCTGCAAT AAT  ACG   TAATAG      ATTGTCGC                                                
           |||||||||| |||||||||||| |||  |||   ||||||      ||||||||                                                A
           GTTTTTATTG AAATCGACGTTA TTA  TGT   ATTATT      GATTATAT                                                
ATAGTAATATT          A            T   TC   ATA      TCTCAC        AAATGGATGTAATCAATTCACGGTAATCTAGGTTACAGCGATTTCTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3840585

ATACACTACATTAAAAATGATCTTTAGCTGCAATTAATTAACGGTAATAGCTTTATTGTCGCTAAATATATATTTTTAGCGGCAATTAACACTCTTTATATGTGTCCCTAAAGTCTTTAGCGACATTGGATCTAATGGCACTTAACTAATGTAGGTAAATATATTAGCACTCTTTATTAATATGTCTATTTATTGCAGCTAAAAGTTATTTTTGTTATAATGATA

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