SE3820597

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8915
  • Solanum tuberosum
  • SE3820597
  • Mutator
  • M30
  • chr03:4762093-4762577
  • TAAAAAATA
  • TAGGCATAATACATATATTGGACCTTAAACTTGGCTTCAAATTTTAACTTTGACCTCCAACTTTCATAGTGCACAAACAAGCACTTTAACTATCCAACCTTTTAATAAATAAACACGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAAAA    C                                                                          A                       -                -       GAGCCAAGAGCGTGAAATGCAAACGCTGCCACGTGTATTAGTGAGCCACTCAATGGCTGCCAACTAATTAAACACTTTACACGTGCATTTTTGAACTAAAAAAAAAAA
       TAGG ATAATACATATATTGGACCTTAAACTTGGCTTCAAATTTTAACTTTGACCTCCAACTTTCATAGTGCACAAACA GCACTTTAACTATCCAACCTTTT AATAAATAAACACGCG ATTTTTG                                                                                                            
       |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||                                                                                                            T
       ATCC TATTATGTATATAACCTGGAATTTGAACTGAAGTTTAAAATTGAAACTGGAGGTTGAAAGTATCACGTGTTTGT TGTGAAATTGATAGGTTGGAAAA TTATTTATTTGTGCGC CAGAATG                                                                                                            
ATAAAAA    C                                                                          C                       A                A       GACCGTTTTGCGCACTACACGTGTAAAAAACGTGCTCATCCTCACTAAAAACTCCGGATGTTGTCATTTTTTTTTACGACTTTACTATTGATATGGAAATTAATTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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