Plant MITE

SE3810610

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8928
Solanum tuberosum
SE3810610
Tc1/Mariner
St1
chr09:47282974-47283248
TA
TACTCCCTCTGTCCTTATTTACGTGTCCATTTTTGA

Secondary structure and sequence

TSD TIR

5'

3'

    CC          A            T      CTTGACAC        AGAAAATAATAATTGACACAATGAGTTTACCCTTTTACCCCTATTAATTGATAGAATTTCAAAATCAATTTACTCATTAAAGAGGT
TACT  CTCTGTCCTT TTTACGTGTCCA TTTTGA        ACCTATTA                                                                                      
||||  |||||||||| |||||||||||| ||||||        ||||||||                                                                                      T
ATGA  GGGATAGGGA AAATGCACAGGT AAAATT        TGAACAGT                                                                                      
    AA          G            T      --TAAAAA        AAAAACTGTTTAGTTCTTTTTTCTTAATAAAGAAAATGGATAATATTGGAGTTAAATAAATCTCAATTACAAAAACTTTTTCCATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810610

TACTCCCTCTGTCCTTATTTACGTGTCCATTTTTGACTTGACACACCTATTAAGAAAATAATAATTGACACAATGAGTTTACCCTTTTACCCCTATTAATTGATAGAATTTCAAAATCAATTTACTCATTAAAGAGGTTCTACCTTTTTCAAAAACATTAACTCTAAATAAATTGAGGTTATAATAGGTAAAAGAAATAATTCTTTTTTCTTGATTTGTCAAAAATGACAAGTAAAAATTTAAAATTGGACACGTAAAGAGGGATAGGGAAAGTA

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