SE3840611

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8929
  • Solanum tuberosum
  • SE3840611
  • CACTA
  • Ca2
  • chr08:28232782-28232924
  • CTT
  • CACTACAAGAAAAGTGTGAATTACATGGGGATTTTCTTGGGAATTAGTATGAAAATCCGTAGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTT             G                           A              CC        CT
   CACTACAAGAAAA TGTGAATTACATGGGGATTTTCTTGGG ATTAGTATGAAAAT  GTAGGAAA  
   ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||  ||||||||  T
   GTGATGTTCTTTT ACACTTAATGTACCCCTAAAAGGATCC TAATCATACTTTTA  CGTCCTTT  
TTC             A                           C              AA        TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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