SE3820615

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8933
  • Solanum tuberosum
  • SE3820615
  • Mutator
  • M8
  • chr06:38859502-38859826
  • TTTATACAA
  • TATACAAGGCATAATACATAAATATGCCCTTTAACTTGGCCTCATTTCACATTTATATCCACCAACTTTGGGTGTGCACAAATAGACACTTAAACTTGTATAAAATTGAACAAGTAGACACATGAGTCCTATGTGGCAT

Secondary structure and sequence

TSD    TIR
5'



3'
 TT    C    C                        C  G         CAC      A   A                    A                                   A      A      T       AAAAC    A  A  --CCA   A
   TATA AAGG ATAATACATAAATATGCCCTTTAA TT GCCTCATTT   ATTTAT TCC CCAACTTTGGGTGTGCACAA TAGACACTTAAACTTGTATAAAATTGAACAAGTAG CACATG GTCCTA GTGGCAT     ACAT GG CA     CGT 
   |||| |||| |||||||||||||||||||||||| || |||||||||   |||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||     |||| || ||     ||| G
   ATAT TTCC TATTATGTATTTATACGGGAAATT AA CGGAGTAAA   TAAATA AGG GGTTGAAACTCACACGTGTT ATCTGTGAATTTGAACATATTTTAACTTGTTTATC GTGTGT CAGGAT CACCGTA     TGTA CC GT     GCA 
AAC    -    A                        T  A         ATA      C   A                    C                                   A      A      T       --GGA    -  -  TAAAC   G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End