Plant MITE

SE3810616

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8934
Solanum tuberosum
SE3810616
Tc1/Mariner
St3
chr04:49631785-49632035
TA
TACTCTCTCCGTCCATATTTGTCCACTAT

Secondary structure and sequence

TSD TIR

5'

3'

TACTCCTATTT      -CTC  T     T           ACTAT     G  -----------------GTC     AT         GTTTATAAAATCAATGTCATGTTGTGTCTATTTTACTATTGATATTAAATAC
           TACTCT    CG CCATA TTGTCCACTAT     CTTGG AT                    CAACA  ACTTGTTTA                                                    
           ||||||    || ||||| |||||||||||     ||||| ||                    |||||  |||||||||                                                     
           ATGAGA    GT GGTAT AACAGGTGATA     GAATC TG                    ATTAT  CCCATTAAA                                                    
                 CAAA  T     C           --ACT     G  TCCTTAATTCTCCGTCATTT     --         ATAGTTTAGTGGGAATAATTTTTATTCAATAGATTTGTAACTTTTTATTTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810616

TACTCCTATTTTACTCTCTCCGTCCATATTTGTCCACTATACTATCTTGGGATGTCCAACAATACTTGTTTAGTTTATAAAATCAATGTCATGTTGTGTCTATTTTACTATTGATATTAAATACTATTTATTTTTCAATGTTTAGATAACTTATTTTTAATAAGGGTGATTTGATAAAATTACCCTATTATTTACTGCCTCTTAATTCCTGTGCTAAGTCAATAGTGGACAACTATGGTTGAAACAGAGTA

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