Plant MITE

SE3820618

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8936
Solanum tuberosum
SE3820618
Mutator
M8
PGSC0003DMB000000382:369945-370270
TTTAAATAA
AAGGCAAAATACATAAACATGACATTTAACTTGGCTTCAATTGGCAACTATGACCTTTAACTTTGGGTGTGCACAAGTAGGCACTTAAACTTGTATAAAATTGAACAAATAGACACATTCATCCTACATGGCACCCTACATGAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTAAAT      A                A                 T  C       A     A                                              C  A         TCA            CCC     ----   AATTT    T
       AAGGCA AATACATAAACATGAC TTTAACTTGGCTTCAAT GG AACTATG CCTTT ACTTTGGGTGTGCACAAGTAGGCACTTAAACTTGTATAAAATTGAA AA TAGACACAT   TCCTACATGGCA   TACAT    GAC     TGTA 
       |||||| |||||||||||||||| ||||||||||||||||| || ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||   ||||||||||||   |||||    |||     |||| C
       TTCCGT TTATGTATTTGTACTG GAATTGAACCGAAGTTG CT TTGATAC GGAGG TGAAACTCACACGTGTTCATCTGTGAATTTGAATGTATTTTAACTT TT ATCTGTGTA   AGGATGTACCGT   ATGTA    CTG     ACAT 
AATAAAT      A                G                 C  A       G     A                                              A  C         CAC            ATT     CATC   -CGGT    C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820618

TTTAAATAAGGCAAAATACATAAACATGACATTTAACTTGGCTTCAATTGGCAACTATGACCTTTAACTTTGGGTGTGCACAAGTAGGCACTTAAACTTGTATAAAATTGAACAAATAGACACATTCATCCTACATGGCACCCTACATGACAATTTTGTATCCTACATGGCGTCCTACATGTATTATGCCATGTAGGACACATGTGTCTACTTATTCAATTTTATGTAAGTTTAAGTGTCTACTTGTGCACACTCAAAGTAGGAGGGCATAGTTATCCGTTGAAGCCAAGTTAAGGGTCATGTTTATGTATTATGCCTTTAAATAA

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