SE3820620

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8938
  • Solanum tuberosum
  • SE3820620
  • Mutator
  • M6
  • chr05:2398754-2399100
  • ATATATATA
  • ATATATATAGGGATAAGGGTCTGAAAAATACCTCAGCTTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCATAAGGACCTATCACCTCCCTTGACTATTTAATACCGTATTT

Secondary structure and sequence

TSD    TIR
5'



3'
         A                     C     C                                     A         C        T                    TTTACCCCCTGA    - TTAATAGTGAATTTTAAAGGTATATATGTGCCCACGTGGACACATTAC
 ATATATAT GGGATAAGGGTCTGAAAAATA CTCAG TTTGGTCGGATTTGCTGTTGCGATACTAAACTTTCAT AGGACCTAT ACCTCCCT GACTATTTAATACCGTATTT            ACTA T                                                
 |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||            |||| |                                                 
 TATATATA CCCTATTCCCAGACTTTTTAT GAGTT AAACCAGCCTAAACGACAACGCTATGATTTGAAAGTA TCCTGGATA TGGAGGGA CTGATAAATTATGGCATAAA            ATTT T                                                
A        -                     A     A                                     C         A        T                    ------------    G ATATATAAACGGGTGCACCTGTATTTTTTATTACGTTTTAATATTTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End