SE3810622

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8940
  • Solanum tuberosum
  • SE3810622
  • Tc1/Mariner
  • St25
  • chr01:63765486-63765791
  • TA
  • TACTATATAAGAAGAGTGAATAAAATTCACTCTTCTTTTGACACATGACACCAAAAAAAAGGAGAGGGTTGCAAGGTGAGGGTATTTTGGATATTTCAAAATACCCTCACATTCACACTTATGTACTACTTATATATTATACATTATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                                                                                                          G     -CTT      -    CAT      TTA
TACTATATAAGAAGAGTGAATAAAATTCACTCTTCTTTTGACACATGACACCAAAAAAAAGGAGAGGGTTGCAAGGTGAGGGTATTTTGGATATTTCAAAATACCCTCACATTCACACTTAT TACTA    ATATAT TATA   TATATA   
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||| ||||   ||||||   C
ATGATATATTCTTCTCACTTATTTTAAGTGAGAAGAAAACTGTGTACTGTGGTTTTTTTTCCTCTCCCAACGTTCCACTCCCATAAAACCTATAAAGTTTTATGGGAGTGTAAGTGTGAATA ATGAT    TATATA ATAT   ATATAT   
                                                                                                                          G     TTTT      T    ---      TAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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