SE3830625

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8943
  • Solanum tuberosum
  • SE3830625
  • hAT
  • Hat3
  • chr01:77503694-77503895
  • TGTACACA
  • TGTACACACAGTGGCGGAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
   AC                 --CCTTACTATT                 CTTCGGCGGAAAATTATATAATTTATACATGGTTAAAATAACTTTTTAGGT
TGT  ACACAGTGGCGGAGCCA            AGGGGGTTCAGAACCCC                                                   
|||  |||||||||||||||||            |||||||||||||||||                                                    
ACA  TGTGTCACCGCCTCGGT            TCCCCCAAGTTTTAGAT                                                   
   CA                 CCTAAAAGTTAT                 TTTTTTATCTGTGTACTTCATCGGCTTCGCCCAAGCTGTAGATGATATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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