SE3810629

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8947
  • Solanum tuberosum
  • SE3810629
  • Tc1/Mariner
  • St6
  • chr04:4179083-4179345
  • TA
  • TACTCCCTCTATTTCAATTTATGTGACACTTTTCGTTTTTTGAGAGTCAAACAATTTAAGTTTGATCGGAAATTTGAGCATGAAATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
          A     A        A         TT        G        -    AG     T   -      GAG    AA     -CAATTT       ATGAAA    TATATTTGTAAACTACGTAAA
TACTCCCTCT TTTCA TTTATGTG CACTTTTCG  TTTTGAGA TCAAACAA TTTA  TTTGA CGG AAATTT   CATG  ATCTT       TTTTGAA      TTTA                     
|||||||||| ||||| |||||||| |||||||||  |||||||| |||||||| ||||  ||||| ||| ||||||   ||||  |||||       |||||||      ||||                     A
ATGAGGGAGG AGGGT AAATACAC GTGAAAAGC  AAAACTCT AGTTTGTT AGAT  AAACT GTC TTTAAA   GTAT  TAGAA       AAAACTT      TAGT                     
          C     A        C         TT        A        C    AA     -   A      -AA    -C     AATTTGT       ----AA    TAATAACACTGAATATCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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