Plant MITE

SE3810631

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8949
Solanum tuberosum
SE3810631
Tc1/Mariner
St6
chr11:7964976-7965238
TA
TATTCTCTCTGTCTCATTTTACGTGACACTTCTCAGATTTTGAGATTCAAACAAGTATATTTTTTACCGTAAGTTTTTCATAGATCTTT

Secondary structure and sequence

TSD TIR

5'

3'

            C   T    C      C  C  AGA        T       A  A  TT   T    T      -TT      -     TAAACA       TTATCAA    -----     CA   A   CT
TATTCTCTCTGT TCA TTTA GTGACA TT TC   TTTTGAGA TCAAACA GT TA  TTT ACCG AAGTTT   CATAGA TCTTT      TTTTGAA       TTAT     TGTGA  TAT GTA  
|||||||||||| ||| |||| |||||| || ||   |||||||| ||||||| || ||  ||| |||| ||||||   |||||| |||||      |||||||       ||||     |||||  ||| |||  T
ATGAGGGAGACA AGT AAAT CACTGT AA AG   AAAGCTCT AGTTTGT CA AT  AAA TGGC TTTAAA   GTGTTT AGAAG      AAAACTT       AATA     ACATT  ATG CAT  
            A   T    A      A  A  CAA        C       -  A  TC   C    C      CGC      T     -TTAAA       TACTTTA    TATAA     TG   -   TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810631

TATTCTCTCTGTCTCATTTTACGTGACACTTCTCAGATTTTGAGATTCAAACAAGTATATTTTTTACCGTAAGTTTTTCATAGATCTTTTAAACATTTTGAATTATCAATTATTGTGACATATAGTACTTTTTACGTAGTTTACAAATATATAAATTTCATTTCAAAAAAATTGAAGATTTTGTGCGCAAATTTCCGGTCAAACTTAAACTGTTTGACTCTCGAAAAACGAAAAATGTCACATAAATTGAAACAGAGGGAGTA

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