Plant MITE

SE3810632

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8950
Solanum tuberosum
SE3810632
Tc1/Mariner
St19
chr03:6188856-6189143
TA
TACTCCCTCTATTCCATATTAATTGAATT

Secondary structure and sequence

TSD TIR

5'

3'

             C A    A        CATAA  CTTATTACATTGTTCAAAATAATTGAATTGTTCAAAGTTCAAGATATATGTTTGAATTATTTTTCATATTTACCCTTTCATTTATTGAAGTTTTAGATTTTCTAGAAG
TACTCCCTCTATT C TATT ATTGAATT     GA                                                                                                            
||||||||||||| | |||| ||||||||     ||                                                                                                             
ATGAGGGAGATAA G ATAA TAACTTAA     CG                                                                                                            
             A C    C        ACACT  ATTACGTGTATATAATTTTTTTTATAAATTCTTGTATTTAATTTGATATTAAAAGTTATTATAGAAAACACTTTAGTATTTATATTGAAACATTCATCACATTAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810632

TACTCCCTCTATTCCATATTAATTGAATTCATAAGACTTATTACATTGTTCAAAATAATTGAATTGTTCAAAGTTCAAGATATATGTTTGAATTATTTTTCATATTTACCCTTTCATTTATTGAAGTTTTAGATTTTCTAGAAGATAAATTACACTACTTACAAAGTTATATTTATGATTTCACAAAAGATATTATTGAAAATTATAGTTTAATTTATGTTCTTAAATATTTTTTTTAATATATGTGCATTAGCTCACAAATTCAATCAATACGAAATAGAGGGAGTA

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