Plant MITE

SE3820642

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8960
Solanum tuberosum
SE3820642
Mutator
M11
chr08:28783097-28783419
TAAAATATG
TGGGGAAAATGCATAAGTACCCCCCCCCAGCCTATGCCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCCCCCCGAACTTATTTTATATATAATTTTCTACCCCCAGCCTACGTGGCACTATCTTGTGGGCC

Secondary structure and sequence

TSD TIR

5'

3'

TAAAATA                         CCC       -G                                                   C           A  TA              ---- A                 ---------    G   - CAG
       TGGGGAAAATGCATAAGTACCCCCC   AGCCTAT  CCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCCCCC GAACTTATTTT TA  TAATTTTCTACCCC    C GCCTACGTGGCACTATC         TTGT GGC C   
       |||||||||||||||||||||||||   |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||||    | |||||||||||||||||         |||| ||| |    
       ATCCCTTTTACGTATTCATGGGGGG   TCGGATA  GGGTTTTAGGGACTCTGTGTGGATTGGAAATGATTCCAGGATAATGGGGGG CTTGAATAAAA AT  ATTAAAAGATGGGG    G CGGATGCACTGTGATAG         AACA TTG G   
GTATAAA                         ---       GG                                                   -           A  TA              AAAA C                 TAACTTTTT    G   T CGC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3820642

TAAAATATGGGGAAAATGCATAAGTACCCCCCCCCAGCCTATGCCCAAAATCCCTGAGACACACCTAACCTTTACTAAGGTCCTATTACCCCCCCGAACTTATTTTATATATAATTTTCTACCCCCAGCCTACGTGGCACTATCTTGTGGGCCCAGCGCGTGTTGACAATTTTTCAATGATAGTGTCACGTAGGCCGAAAAGGGGTAGAAAATTAATTAAAAAATAAGTTCGGGGGGTAATAGGACCTTAGTAAAGGTTAGGTGTGTCTCAGGGATTTTGGGGGATAGGCTGGGGGGTACTTATGCATTTTCCCTAAAATATG

Copy Cancel