SE3840643

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8961
  • Solanum tuberosum
  • SE3840643
  • CACTA
  • Ca2
  • chr05:28353940-28354082
  • TAG
  • GCACTACAAGAAAATTGTGAATTACATGGGGATTTTCCTGAGAATTAGAATGAAAATTTGCAGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              T                         A       A                  AT
  GCACTACAAGAAAA TGTGAATTACATGGGGATTTTCCTG GAATTAG ATGAAAATTTGCAGGAAA  
  |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||  A
  TGTGATGTTTTTTT ACACTTAATGTACCCCTAAAAGGAC CTTAATC TACTTTTAAGTGTCCTTT  
GA              C                         C       A                  GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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