Plant MITE

SE3810644

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8962
Solanum tuberosum
SE3810644
Tc1/Mariner
St17
chr05:17314831-17315106
TA
TACTCCCTCTAGTCCATATTAAGTGAATTGTTG

Secondary structure and sequence

TSD TIR

5'

3'

             C                   --    TGGCATGCCCCTTTAGAAAAATATTTAAGGACATAAATTAAAGGGTACTTTCCGCTATTATCCTTTTGATTATTCGCAAATTGATGTACTATTATATGTA
TACTCCCTCTAGT CATATTAAGTGAATTGTTG  GGGT                                                                                                    
||||||||||||| |||||||||||||||||||  ||||                                                                                                     
ATGAGGGAGATCA GTATAATTCACTTAACAAC  TGAA                                                                                                    
             A                   TC    AAAAAGTATTAAGTTTTATTCACTTATTAAGGTTCAAGTTTTTTTAAGAACCCGGAAAAAAAGTATAAATAGGAAGTACATTACTCCAAGAATTGATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810644

TACTCCCTCTAGTCCATATTAAGTGAATTGTTGGGGTTGGCATGCCCCTTTAGAAAAATATTTAAGGACATAAATTAAAGGGTACTTTCCGCTATTATCCTTTTGATTATTCGCAAATTGATGTACTATTATATGTAAAGTAGTTAAGAACCTCATTACATGAAGGATAAATATGAAAAAAAGGCCCAAGAATTTTTTTGAACTTGGAATTATTCACTTATTTTGAATTATGAAAAAAAGTCTCAACAATTCACTTAATATGAACTAGAGGGAGTA

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