Plant MITE

SE3810645

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8963
Solanum tuberosum
SE3810645
Tc1/Mariner
St20
chr02:44694513-44694779
TA
TACTCCCACCGTTCACTTTTGATTGTCCACT

Secondary structure and sequence

TSD TIR

5'

3'

       A             A     C   TTGG   TTGCACGC   TTTAGAAACAATGATTAATATGAGTATGTTTTACCACAATACCCATATTAATTGATGTATAGTCTTAGGTCTTGGAAAATGTTTTGAGA
TACTCCC CCGTTCACTTTTG TTGTC ACT    ACT        TCT                                                                                         
||||||| ||||||||||||| ||||| |||    |||        |||                                                                                         A
ATGAGGG GGCAAGTGAAAAT AACAG TGA    TGA        TTT                                                                                         
       A             A     A   --TA   --------   TTATGTAAAAGTGAAAATGAACAATGAAAATCGTATAGTTATTTTCATGTATAAAAAAAAGTACAAAATGGGAGTTGTACATAATGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3810645

TACTCCCACCGTTCACTTTTGATTGTCCACTTTGGACTTTGCACGCTCTTTTAGAAACAATGATTAATATGAGTATGTTTTACCACAATACCCATATTAATTGATGTATAGTCTTAGGTCTTGGAAAATGTTTTGAGAATAAGTAATACATGTTGAGGGTAAAACATGAAAAAAAATATGTACTTTTATTGATATGCTAAAAGTAACAAGTAAAAGTGAAAATGTATTTTTAGTATAGTAGACAAATAAAAGTGAACGGAGGGAGTA

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