SE3830653

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8971
  • Solanum tuberosum
  • SE3830653
  • hAT
  • Hat67
  • PGSC0003DMB000000720:31502-32156
  • GCAATGAG
  • CAATGAGTAGGGATGGACGATATGGTGTAGTAT

Secondary structure and sequence

TSD    TIR
5'



3'
 G  A  AG     A   AC A        A            -    G      T  ATATTGTAACTTTGGTATTTGGTTTTAAAAAAATATTATACTATTACCATATCAATTTAATTCAGTATGGTTCGGTATATCAAAATTCACTTTCGATATTCTATGGTATGGTAAATAATTGGTAATCATAGTTTGTTCAACTTCAATTAATATATACTCATATAATAGAGTATTATGACTTCAACAAATTAAAAACGTTCCAATTATTGTATCATACTAACACATTGCACATGTAGAAATATATATTCAAAATAAAGTACAAACAACTCCTTT
  CA TG  TAGGG TGG  G TATGGTGT GTATGATACGGT ATTT AAAGTT CA                                                                                                                                                                                                                                                                                 
  || ||  ||||| |||  | |||||||| |||||||||||| |||| |||||| ||                                                                                                                                                                                                                                                                                  
  GT AC  ATCCC ACC  C GTACCATA CATATATGGTTT ATGG TATGGT TG                                                                                                                                                                                                                                                                                 
GA  A  -G     C   -- -        C            A    -      A  GTTTTTAAAATTATAGCACCAAAACCATAATACTATAAACCACACCATATACCATATGTAAAAGTAAAAAAACCATAAGCTATGCCATAAACCATAAATCTTTATTGTATGATTTAATAACTTATAGTATGACTTTATATATCAATGTATTTATTGTGTGTGTGTGATTAATGTTTATACATTGGATCATATTCATATTTGATTTACAAATCTTCAATTTTGAAACTGATGAGATAAAACTAACTTTACATAAATTTTATATTGATTAATTGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End