SE3820655

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8973
  • Solanum tuberosum
  • SE3820655
  • Mutator
  • M8
  • chr08:4269756-4270081
  • TTTTCTTTT
  • GGCATAATACATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTCTTTT             TACAG   C           GTC   T          A     -                      A                           A         TC             CCCTACAT    ATTTTGTGTCCTA
         GGCATAATACATA     GAT CTTAACTTGAT   AGC GACAACTATG CCCTT AACTTTGGGTGTGCACAAGTAG CACTTAAACTTGTATAAAATTGAACAA TAGACACAT  GTCCTACATGACA        GACA             
         |||||||||||||     ||| |||||||||||   ||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||        ||||             C
         CCGTATTATGTAT     CTG GAATTGAACTG   TCG CTGTTGATAC GGGAG TTGAAATTCACACGTGTTCATC GTGAATTTGAACATATTTTAATTTGTT ATCTGTGTG  CAGGATGTACTGT        ATGT             
TTTTCTTTT             TTATA   A           AAA   C          -     G                      C                           C         CA             -----ATT    ACATCCTGCGGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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