Plant MITE

SE3830656

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_8974
Solanum tuberosum
SE3830656
hAT
Hat26
chr08:38213293-38214072
AGGAGGAG
TAGAGCCGTCAAAACGGGT

Secondary structure and sequence

TSD TIR

5'

3'

AGGAGGAG      C       C    TTA    A    GACGG    ----     ---     TTATTGGGGTAGGGTTGGGATAGATTTTTTCAAGCCCATTTAAAACTAGGGCTTATAAGCCCGACCCATATAAGCTCTTGGCCCTTAAGGCTTGATCGGGGCCGGGACGGGGTCGGCCCACGGGCCAAAACTTTTTATTTAAGGGTAACTTACAATAATCTCACTAGTATATAATCTAATTACTTAAATACACACTATGTTGTCATATGATGAATCTTACCAGATTTTGGTATGTCCAGATACATGTATCTCGAAATATATGGACTCAAAATTAGTTAATTTGTTCTAGATACACTCTATCCAAGTAGATTCACATGTATCTAAGATGCATAG
        TAGAGC GTCAAAA GGGT   GCCC TGGG     CCCA    ACTCA   CCCCG                                                                                                                                                                                                                                                                                                                                             
        |||||| ||||||| ||||   |||| ||||     ||||    |||||   |||||                                                                                                                                                                                                                                                                                                                                             A
        ATCTCG CAGTTTT CCCA   GTGG GGTC     GGGG    CCGGG   GGAGC                                                                                                                                                                                                                                                                                                                                             
GAGGAGGA      A       -    ---    -    -----    TGGC     TTC     GCTCGGTTCCTTAAACTTCCCGATCCCGCCCGGACGGGAAGTAACCCTTCCCGGACTTTTACAAGTTGGGTTGGGTTGGGATCTTCCCGGCTCCCGACCCCGCCCGATCGGGAATAAAAAAAGAAAAAAGTAAAAAAAAAGAAAAGTTTGAATATTAAGATATTGTAGTTCTTTTACTCTTCTAAAAGTTTAGTTTATACCGTTTGTTACCAACAACAAAGTTATTGTGATCGTTTTTTAGAACACATTAATCGTACATAGAGTGTATGATCTATGCGCTCGCTCTATCTCTGACTGTTCGTTCTACCCTCCCTTCGCTCCCGCGCTCTAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3830656

AGGAGGAGTAGAGCCGTCAAAACGGGTTTAGCCCATGGGGACGGCCCAACTCACCCCGTTATTGGGGTAGGGTTGGGATAGATTTTTTCAAGCCCATTTAAAACTAGGGCTTATAAGCCCGACCCATATAAGCTCTTGGCCCTTAAGGCTTGATCGGGGCCGGGACGGGGTCGGCCCACGGGCCAAAACTTTTTATTTAAGGGTAACTTACAATAATCTCACTAGTATATAATCTAATTACTTAAATACACACTATGTTGTCATATGATGAATCTTACCAGATTTTGGTATGTCCAGATACATGTATCTCGAAATATATGGACTCAAAATTAGTTAATTTGTTCTAGATACACTCTATCCAAGTAGATTCACATGTATCTAAGATGCATAGACAAATCTCGCGCCCTCGCTTCCCTCCCATCTTGCTTGTCAGTCTCTATCTCGCTCGCGTATCTAGTATGTGAGATACATGCTAATTACACAAGATTTTTTGCTAGTGTTATTGAAACAACAACCATTGTTTGCCATATTTGATTTGAAAATCTTCTCATTTTCTTGATGTTATAGAATTATAAGTTTGAAAAGAAAAAAAAATGAAAAAAGAAAAAAATAAGGGCTAGCCCGCCCCAGCCCTCGGCCCTTCTAGGGTTGGGTTGGGTTGAACATTTTCAGGCCCTTCCCAATGAAGGGCAGGCCCGCCCTAGCCCTTCAAATTCCTTGGCTCGCGAGGCTTGGGCCCGGTGGGGCTGGGGTGACCCTTTTGACAGCTCTAAGGAGGAG

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