SE3830664

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8982
  • Solanum tuberosum
  • SE3830664
  • hAT
  • Hat5
  • chr01:44644449-44644949
  • CATTTTTC
  • TAGGGGTGTCAAATGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTTTTC            --      AGG    -      -   -G  GATATTAAAATGG    -  ATAGAAATCGGATTGGGTCTTGACCCGCCCAAGTTTACTTTGGGCTCAAATGGGCTAAAAACGGGTTGGGTCTTGACCCGCTTAATCTCAATAATTTTAACATAGTGATATTTAACTTTTATAATCACAATTTGAATTTCAACTCAAATTTTTTTTTTTAAAAAAAGTAACAAATGGATAGATAAATCCTA
        TAGGGGTGTCAA  ATGGGC   TTGG GTTGAA ATT  AA             GTTG AA                                                                                                                                                                                               
        ||||||||||||  ||||||   |||| |||||| |||  ||             |||| ||                                                                                                                                                                                               A
        ATCCCCACAGTT  TACTTG   AGTT GTATCC TTG  CG             GGTT GG                                                                                                                                                                                               
CTTTTTAC            TT      ---    C      A   AG  -------------    A  CAGATCTTTAAAATTCCCAACCCGAGTTCTATTAAACTTAACCCAAGTTTGAGTTGGGTAAGTTCGGATTGTGTAAAATTCTCTTAGAAGTTAACTCGGGTTAAGTTAGAGGTTAAAGTTAGGCAAAATTTTGAGAAATAATTCTATACAAGGATATAAATTCCATACTTAATAATAGATAAATTATAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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