SE2160001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8985
  • physcomitrella Patens
  • SE2160001
  • Micron
  • Mim1
  • scaffold_479:149600-149813
  • ATATGTA
  • TATGTATATAGAAGAATGTTTAATAGACCCACGCTTTTACTAAATAGACCCATCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
A          GAA       T          C C           ----AG         TGTGAAGAATATGGT      G     ----TGT    G      -----     TTGC
 TATGTATATA   GAATGTT AATAGACCCA G TTTTACTAAAT      ACCCATCCT               AATCAT ATGAA       GGTT GTTTTT     ATTGG    
 ||||||||||   ||||||| |||||||||| | |||||||||||      |||||||||               |||||| |||||       |||| ||||||     |||||     
 ATATATATAT   CTTACAA TTATCTGGGT C AAAATGATTTA      TGGGTAGGA               TTGGTA TACTT       CTAA TAAAAG     TAACC    
           ACC       T          T A           GTTGGA         ---------------      G     TAAAGAT    G      GGTAA     CACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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