SE2160009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_8993
  • physcomitrella Patens
  • SE2160009
  • Micron
  • Mim1
  • scaffold_119:370162-370382
  • ATATATA
  • TATATAGGAGAATGTTAAATAGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
A                        CCAA       C      TATAC       CTATCCATTATCAAAAAAATAAACAACTTCT   TTCATTTCTCCACTATTGGATTTACAACCAATGA
 TATATAGGAGAATGTTAAATAGAC    GTTTTTA TAAATT     ATCCATC                               AGA                                  
 ||||||||||||||||||||||||    ||||||| ||||||     |||||||                               |||                                  A
 ATATATTCTCTTATAATTTATCTG    CGAAAAT ATTTAA     TGGGTAG                               TAC                                  
                         AACA       A      ----T       ---------------------------AAAC   TTCTTATACCATTAGTACTACTTACACCAACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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