Plant MITE

SE2160016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9000
physcomitrella Patens
SE2160016
Micron
Mim1
scaffold_71:137813-138051
ATATATA
ATATATATGAGAATGATAAATAGATCCA

Secondary structure and sequence

TSD TIR

5'

3'

         A     A            -----TTC     ---    ATA -   C   TTTGATGAAGAATATGGTAATTGTAATGAATGTGGTTGGTTTTTATTGGTTGCAGATCC
ATATATATG GAATG TAAATAGATCCA        TTTTT   CTAT   G ATC ACC                                                           
||||||||| ||||| ||||||||||||        |||||   ||||   | ||| |||                                                            
TATATATAC CTTAC ATTTATCTGGGT        GATTT   TGGA   G AAT AGA                                                           
         C     A            TAAAAAAT     AGT    --- T   -   ATTGGTAGTCTTTCTTTTTTTCTATTTTTTCCGTAGAAATCTAAATAAAGAGATAATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2160016

ATATATATGAGAATGATAAATAGATCCATTCTTTTTCTATATAGATCCACCTTTGATGAAGAATATGGTAATTGTAATGAATGTGGTTGGTTTTTATTGGTTGCAGATCCAATAATAGAGAAATAAATCTAAAGATGCCTTTTTTATCTTTTTTTCTTTCTGATGGTTAAGATAATGAGGTTGATTTAGTAAAAAATTGGGTCTATTTAACATTCCCATATATAT

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