SE2160017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9001
  • physcomitrella Patens
  • SE2160017
  • Micron
  • Mim1
  • scaffold_344:100733-100939
  • TATAAAT
  • ATAGGGGAATGTTAAATAGACCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAA               A        TACTTA       TTTAC  -   CCTC     AAACTCAAATAACC     ATTTATTTCTCCACTACTAGATC
     ATAGGGGAATGTTAA TAGACCAA      TACTAAA     TC ACC    ATGAA              TCTAG                       
     ||||||||||||||| ||||||||      |||||||     || |||    |||||              |||||                       C
     TATCCCCTTACAATT ATCTGGTT      ATGATTT     AG TGG    TACTT              TACTT                       
ATAAA               A        CCAAAA       -TACT  A   ATAC     CTTACCATTAATAC     ACAACTACCAAAAGTAACCAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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