SE2160019

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9003
  • physcomitrella Patens
  • SE2160019
  • Micron
  • Mim1
  • scaffold_49:1894354-1894571
  • TATATAA
  • TATATAAGGGAATGTTAAATAGACCCATGTTTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
        A                    T       -------C  -      -----C     AT  ATGAAGAATATGGTAATCATGATAAATGTGGTTGATTTTTGTTGGTT
  TATATA GGGAATGTTAAATAGACCCA GTTTTTA        TC AACAAA      CCACA  TC                                               
  |||||| |||||||||||||||||||| |||||||        || ||||||      |||||  ||                                               G
  ATATAT TCTTTACAATTTATCTGGGT TAAAAAT        TG TTAGGT      GGTAG  TA                                               
AT      C                    T       AATTTAGC  G      AAGATT     --  CTTTTTTATATTACTGTAGATCTAAGTAAAGAGGTGAAAATCTACAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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