SE3630002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9005
  • Selaginella moellendorffii
  • SE3630002
  • hAT
  • Hat1
  • scaffold_8:1947688-1947998
  • CCAGGAAC
  • CCAGGAACCATACTTGCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
     A  AAC           CCGAAC     AACGCAACCGGATTCGAACGGGTATCGAACGTTTAATACCCGTTTAGCTTTTTTTCGAACGGGTATAATGGTTTTCAGTTTTTTTCGAACCCTAATTTTACAGTTTTTTTCGAACCCTGATTTTACAT
   CC GG   CATACTTGCAT      ATTCG                                                                                                                                
   || ||   |||||||||||      |||||                                                                                                                                G
   GG CC   GTATGAACGTA      AGCTT                                                                                                                                
CAA  A  ---           ------     GCCCATGCTAATTATTTTTTGCGGCAAATTTTGCGCGCATATTATGCCGCAAATTTTGCCGCAAATTTGTGGTTCTTATAAAAATTTTTGGGATTTCTTATACGAAAGAAAATGAATCCTAATCCCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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