SE2850002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9007
  • Sorghum bicolor
  • SE2850002
  • PIF/harbinger
  • To2
  • chromosome_6:61360719-61360967
  • TAG
  • GGGCCTTGTTTAGTTCTCAGGAAATTTTGCAAAATTTTTCAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 CA          CA     TTT   ATTCC    ----C     GAATCTTTAGACGCATGTATGGAGTATTAAATATAGACAAAAATAAAAACTAATTGCACAGTTTG
  GGGCCTTGTTTAGTTCT  GGAAATTTTG  AAATT   CAC     CCGT     ACATC                                                                 
  |||||||||||||||||  ||||||||||  |||||   |||     ||||     |||||                                                                  
  TCCGGAACAAATCAAGG  TTTTTAAAAC  TTTAG   GTG     CGTG     AAACA                                                                 
GA                 -C          CC     -CT   -ACAT    AAAGC     TAAACTGTTTATAATAGATTAGTACCTGATTGATCTGAGTTTTCCAAGCAGAGCAGTTAAGGCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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