SE2850015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9020
  • Sorghum bicolor
  • SE2850015
  • PIF/harbinger
  • To2
  • chromosome_10:16186613-16186861
  • TTA
  • AGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 C                  TTTC    TCCCCGTCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGGT
  AGGCCTTGTTTAGTTCC AAAAAATTTTGCAAAATT    AGAT                                                                                
  ||||||||||||||||| ||||||||||||||||||    ||||                                                                                C
  TCCGGAACAAATCAAGG TTTTTTAAAACGTTTTAG    TATG                                                                                
AT                 -                  ---C    ACATCGTAAAAGCAAACATAAACTGTTTTTAATAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCAGTTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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