SE2850016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9021
  • Sorghum bicolor
  • SE2850016
  • PIF/harbinger
  • To3
  • chromosome_9:10717690-10717937
  • ATA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA                TATTTTTTTTGG      ---  ACT  AGCACTT   TTTTTATTTGGTAATTATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCATCTCATGATTTATAGGCAAACTGT
   AGGCCTTGTTTAGTTC            TTTTGG   GT   GT       TCA                                                                              
   ||||||||||||||||            ||||||   ||   ||       |||                                                                              G
   TCCGGAACAAATCAAG            TGGGGT   TG   GT       TTT                                                                              
 AA                ------------      TTT  ---  ----TTT   TAAGTTCTAAGAGATAGTGTAATTTAGAACACCGTGTACGTACCTCATAATTTATATCTGTTTTTGTTTTTGATTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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