Plant MITE

SE2810020

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9025
Sorghum bicolor
SE2810020
Tc1/Mariner
St4
super_337:12426-12663
TA
TACTCCCTCCGTCCTAAAAAGAGTGTCGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

        C   C            TC     -AGAATTTCAAC   T         ATC T            T   TACATAAATAT      TT    TGACTTATTTT        A  TA
TACTCCCT CGT CTAAAAAGAGTG  GTTTT            ATC TGTTTGATC   C TCTTATTTAAAA TTT           TATATA  TTGT           ATCATTAG GA  
|||||||| ||| ||||||||||||  |||||            ||| |||||||||   | |||||||||||| |||           ||||||  ||||           |||||||| ||   
ATGAGGGA GCA GGTTTTTCTCAC  CAAAA            TAG ACAAACTGG   G AGAATAAATTTT AAA           ATATAT  AATA           TAGTGATC TT  
        A   A            TA     AATAAAAATCTT   C         CAA C            T   -----------      TT    TTTTATTTATT        A  TT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810020

TACTCCCTCCGTCCTAAAAAGAGTGTCGTTTTAGAATTTCAACATCTTGTTTGATCATCCTTCTTATTTAAAATTTTTACATAAATATTATATATTTTGTTGACTTATTTTATCATTAGAGATATTTTACTAGTGATTTATTTATTTTATAATTTATATAAAATTTTTAAATAAGACGAACGGTCAAACACGATTTCTAAAAATAAAAAACATCACTCTTTTTGGAACGAAGGGAGTA

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