Plant MITE

SE2850025

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9030
Sorghum bicolor
SE2850025
PIF/harbinger
To2
chromosome_4:64648476-64648724
TTA
AGGCCTTGTTTAGTTCCGGAAAATTTTGGGAAATCGACAC

Secondary structure and sequence

TSD TIR

5'

3'

TT                 -           G     -CGA   ----  T   A - TTC   -    T ---   -   ATATTATCCAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTT
  AGGCCTTGTTTAGTTCC GGAAAATTTTG GAAAT    CAC    TG AGC C T   GTT TGTA T   TGA TAA                                                    
  ||||||||||||||||| ||||||||||| |||||    |||    || ||| | |   ||| |||| |   ||| |||                                                    C
  TCCGGAACAAATCAAGG TCTTTTAAAAC TTTTA    GTG    GA GCA G G   TAG TTAG A   CTG GTA                                                    
AT                 G           G     AAAA   TAAG  -   - T ---   C    - AAT   C   CGTACTTCATAATTTATATCTACTTTTATTTTTGATTAACGTGTCAAACCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850025

TTAGGCCTTGTTTAGTTCCGGAAAATTTTGGGAAATCGACACTGTAGCACTTTCGTTTGTATTTGATAAATATTATCCAATTATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTCATCTATATTTAATACTTCATGCATGCGTCTAAAGATTCGATGTGACGAGGAATGTGAAAAATTTTGCAAAATTTTCTGGGAACTAAACAAGGCCTTA

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