SE2850026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9031
  • Sorghum bicolor
  • SE2850026
  • PIF/harbinger
  • To6
  • chromosome_9:51477960-51478329
  • TTA
  • AGCAACTCCAACAGTTTTGCAAATAGGTTTGGCATTTTTGTTTTTTGCCAAAACTCTCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
  TT                   C    -AG        TT -     T       AA           CTTCTA     CAGTTTGGCAATTGGGTTTAGCATTTATAGCAAGTTGGCAAATTCTTCTCCTTTCTTGGCATTTATGCACACCTATAATAGGCTTGACATTCTGCATGCGTGTGCTTTTAT
    AGCAACTCCAACAGTTTTG AAAT   GTTTGGCA  T TTGTT TTTGCCA  ACTCTCAAAAT      TCCAA                                                                                                               
    ||||||||||||||||||| ||||   ||||||||  | ||||| |||||||  |||||||||||      |||||                                                                                                                
    TCGTTGAGGTTGTTAAAAC TTTA   CAAACCGT  A AACAA AAACGGT  TGAGGGTTTTG      CTATA                                                                                                               
ATTC                   A    AAA        TT C     T       --           ------     CCCTTCCCTTGTTTTTCCTGTAGAGGTTCACAAACCGTTAAAACTGAACCGTTTTTGTTTTAAGATGATCAAGACTTCTAGTTGCTTTTTAGTAGTTCAACAGTCGAACGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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