SE2850027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9032
  • Sorghum bicolor
  • SE2850027
  • PIF/harbinger
  • To7
  • chromosome_10:58647259-58647470
  • TAA
  • AGGCCAGTCTCAATGCATAGTTTCATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  A         CACA   ACCAAGACTATAAACTAGGTAACCGAGCCACAGGAGTTTCATGGGGATGAAACTCCTCTCTCATCTGATG
  AGGCCAGTCTCAATGCAT GTTTCATGA    GTT                                                                      
  |||||||||||||||||| |||||||||    |||                                                                      A
  TCCGGTCAGAGTTACGTA CAAAGTACT    CAC                                                                      
AA                  -         --CT   AGTACGTGTAATTTATCCAACGGTGTATTCGTTTTAACGACTGAACCGTCCCAGTAATTTACTTCCTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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