SE2850032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9037
  • Sorghum bicolor
  • SE2850032
  • PIF/harbinger
  • To2
  • chromosome_5:621993-622240
  • TAA
  • AGGCCTTGTTTACTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            C    ACCCAAAATCCAAAACTTTTC      TCC  TCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATAGAAACGAAATTAAAAACTAATTGCACAGTTTGGTCGAAATTTAC
  AGGCCTTGTTTA TTCC                     AAGATT   CG                                                                                    
  |||||||||||| ||||                     ||||||   ||                                                                                     
  TCCGGAACAAAT AAGG                     CGGCTT   TA                                                                                    
AA            C    -------------------AA      ---  AAAAAGCCCTGTGACATCGTTAAAGCAAACAAATACCATTAATAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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