Plant MITE

SE2830034

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9039
Sorghum bicolor
SE2830034
hAT
Hat3
chromosome_9:891729-891943
GTTCCTTG
CTTGGTGGTGAAATAAAG

Secondary structure and sequence

TSD TIR

5'

3'

  GTTC          AA  AA  TTTATAATA    AAAGCA     ----    CTGCACCCCGGGCTAGGGGGCTGCAGCCCGGGGCGTGGTCCAAAATTGTTAAGAACACCTCTTCATCTTTAGT
      CTTGGTGGTG  AT  AG         AAGA      GGGGC    GGAT                                                                         
      ||||||||||  ||  ||         ||||      |||||    ||||                                                                          
      GAGTCACCGT  TA  TC         TTCT      CCCCG    ATCA                                                                         
CGAAAA          -C  GG  TTTGCTACA    ----CC     ATTT    TTCTTTTCTGATCTTTAGGATATTATCTAGTCACAACTCATTCCGACTGATGAATCTGAGATTTGATAAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830034

GTTCCTTGGTGGTGAAATAAAGTTTATAATAAAGAAAAGCAGGGGCGGATCTGCACCCCGGGCTAGGGGGCTGCAGCCCGGGGCGTGGTCCAAAATTGTTAAGAACACCTCTTCATCTTTAGTTTAAAATAGTTTAGAGTCTAAGTAGTCAGCCTTACTCAACACTGATCTATTATAGGATTTCTAGTCTTTTCTTACTATTTAGCCCCCCTCTTACATCGTTTCTGGATCTGCCACTGAGAAAAGC

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