Plant MITE

SE2830036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9041
Sorghum bicolor
SE2830036
hAT
Hat4
chromosome_1:23119928-23120219
GATCTAAC
GATCT

Secondary structure and sequence

TSD TIR

5'

3'

         AACT              AT      ---- G   G  -    AC GATATCATATTTGTTTTCATATTTCTAGTCGGATTCGGATTCGAATACGGATAATGTCAATCATGTCGGATAAGATATAATTGGATGTCGACATCGTAA
    GATCT    AGGGATGAAAACGG  CGGATA    C GAC GA TATC  C                                                                                                   
    |||||    ||||||||||||||  ||||||    | ||| || ||||  |                                                                                                    
    CTAGA    TCCCTACTTTTGCC  GCCTAT    G CTG GC TAAG  C                                                                                                   
CAAT     ----              AT      AAAA G   -  A    -- TCTGGCTTAAGCAAATCTCTCCAAGTCTAGACAGGCATAGGCTCAGGCTTACAAATTGTAGGCTATGGCATAGGCATAGGCTTATGAATTTAGCATATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830036

GATCTAACTAGGGATGAAAACGGATCGGATACGGACGGATATCACCGATATCATATTTGTTTTCATATTTCTAGTCGGATTCGGATTCGAATACGGATAATGTCAATCATGTCGGATAAGATATAATTGGATGTCGACATCGTAAATATACGATTTAAGTATTCGGATACGGATACGGTATCGGATGTTAAACATTCGGACTCGGATACGGACAGATCTGAACCTCTCTAAACGAATTCGGTCTCGAATACGGTCGGAAAATATCCGTACCGTTTTCATCCCTAGATCTAAC

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