Plant MITE

SE2850046

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9051
Sorghum bicolor
SE2850046
PIF/harbinger
To12
chromosome_9:55641959-55642205
TAA
AGGCCTTGTTTAGTTCCAAAAACTGAAAAGTTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TA   C          ----        C     AG     ----   A  GT    AT   ----  - TTTATTTAACAAATATTATCCAATCATAGAGTAACTAGGCTTAAAAGATTCATCTCGTGATT
  AGG CTTGTTTAGT    TCCAAAAA TGAAA  TTTTC    GAA CT  AGCC  TTT    GT T                                                              
  ||| ||||||||||    |||||||| |||||  |||||    ||| ||  ||||  |||    || |                                                              T
  TCC GAACAAATCA    AGGTTTTT GTTTT  AAAAG    AAA GC  AGTG  TAG    GA T                                                              
AA   A          AGTG        A     AG     TTCT   -  --    --   CTTA  A GCGGTGTACGTACCTCATCATTTATATCTGCTTTTATTTTTGATTAATATGTCAAATACACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850046

TAAGGCCTTGTTTAGTTCCAAAAACTGAAAAGTTTTCGAAACTGTAGCCATTTTGTTTTTATTTAACAAATATTATCCAATCATAGAGTAACTAGGCTTAAAAGATTCATCTCGTGATTTACACATAAACTGTATAATTAGTTTTTATTTTCGTCTATATTTACTACTCCATGCATGTGGCGTAAGATTCGATGTGACGAAATCTTGAAAAGATTTTGATTTTTGGAGTGAACTAAACAAGACCTAA

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