SE2850047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9052
  • Sorghum bicolor
  • SE2850047
  • PIF/harbinger
  • To1
  • chromosome_9:2423422-2423669
  • TTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                ACCTCAAAAACCAAAATTTTTCAAG      CGTCACATCGAATCTTACGCCACATGCATGGAGTATTAAATATAGACGAAAATAAAAACTAATTGCACAGTTTACATGTAAATCACG
  AGGCCTTGTTTAGTTC                         ATTTTC                                                                                       
  ||||||||||||||||                         ||||||                                                                                       A
  TCCGGAACAAATCAAG                         GCTTTT                                                                                       
AT                -------------------------      AACTTTTCAAAAGCTTTGACATCGTGAAAGCAAAAATAAACTGTTTGTAATAGGTTAATATCTCATTGATCCGAATTTTCTAAGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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