SE2850048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9053
  • Sorghum bicolor
  • SE2850048
  • PIF/harbinger
  • To2
  • chromosome_1:9615278-9615526
  • GTA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTA                ACCCC    ACCAAAAACTTTTCAAGATTCCCCGTCACATCAAATCTTGGAGCACATGCATTAAGTATTAGATATAGACGAAAATAAAAACTAATTGCACAGTTTGCCT
   AGGCCTTGTTTAGTTC     GAAA                                                                                                    
   ||||||||||||||||     ||||                                                                                                     
   TCCGGAACAAATCAAG     GCTT                                                                                                    
 AA                -----    AAAAAAAGCCTAAAGCCGTGACATCGTAAAAGCAAAAATAAACTGTTTATAATAGGTTAGTACCTGATTAATCCGAATTTTCTAAGTAGAGCACTAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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