Plant MITE

SE2830050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9055
Sorghum bicolor
SE2830050
hAT
Hat5
chromosome_9:7534290-7534464
ACTAATTA
TAATTACAGGGGCGAAGCCAG

Secondary structure and sequence

TSD TIR

5'

3'

AC      --         A     TGACAAAATAA  CT  TGCATAGCTCAAATGACATATATAATTGTCTTAAATTATATGGTAAATTTGAA
  TAATTA  CAGGGGCGA GCCAG           CC  GG                                                     
  ||||||  ||||||||| |||||           ||  ||                                                      
  ATTAAT  GTCCCCGCT CGGTC           AG  TC                                                     
        CA         G     ---------CA  --  GAACGACTCACGGTTCCGTGGTCCCATTTTTTTTACAAAATGGTGATTTGTCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830050

ACTAATTACAGGGGCGAAGCCAGTGACAAAATAACCCTGGTGCATAGCTCAAATGACATATATAATTGTCTTAAATTATATGGTAAATTTGAAGCTGTTTAGTGGTAAAACATTTTTTTTACCCTGGTGCCTTGGCACTCAGCAAGCTGAACCTGGCGTCGCCCCTGACTAATTA

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