SE2850054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9059
  • Sorghum bicolor
  • SE2850054
  • PIF/harbinger
  • To2
  • chromosome_7:16505650-16505898
  • TAA
  • AGGCCTTGTTTAGTTCCTTCCCGAAATGTTTTCGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA            G    TT        G -------        CACTGTA    TTTC     T   TGGTAATTATTGTTCAATTATGGACTAACTAGACTCAAAAGATTCGTCTCGTAAATTTCGACC
  AGGCCTTGTTTA TTCC  CCCGAAAT T       TTTCGGGA       GCAC    GTTTG TTG                                                               
  |||||||||||| ||||  |||||||| |       ||||||||       ||||    ||||| |||                                                               A
  TCCGGAACAAAT AAGG  GGGTTTTA G       AAAGTTCT       GAGG    TAGTG TAG                                                               
AA            G    -T        G TTTTTGA        -----AA    ----     -   TTTAGAAATCTGCGTACGTACCTCATAATTTATATTTGCTTTTATTTTTAATTAATGTGTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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