Plant MITE

SE2810058

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9063
Sorghum bicolor
SE2810058
Tc1/Mariner
St9
chromosome_7:62824645-62824908
TA
TACTCCCTCCGTCCCAAATTATAAATCATTCCAAGAATTTTAGAGAGTCAAATTTTTTCAAGTTTGACCAAATTTATA

Secondary structure and sequence

TSD TIR

5'

3'

            C           A                A            -                  TT    ---------------------      -- ATAA   TATTTTTGGTACCAACCAAGTATCATTAGA
TACTCCCTCCGT CCAAATTATAA TCATTCCAAGAATTTT GAGAGTCAAATT TTTTCAAGTTTGACCAAA  TATA                     TAGCAA  A    TAA                              
|||||||||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||  ||||                     ||||||  |    |||                               
ATGAGGGAGGCA GGTTTAATATT AGTAAGGTTCTTAGAA CTTTCAGTTTGG AAAAGTTCAAACTGGTTT  ATAT                     CAGTAT  T    ATC                              
            A           C                C            T                  TT    CTCTCTTTATATTTCTAAATA      TT ----   CATGTGATACTTTTATATTGATTGTTTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810058

TACTCCCTCCGTCCCAAATTATAAATCATTCCAAGAATTTTAGAGAGTCAAATTTTTTCAAGTTTGACCAAATTTATATAGCAAAATAATAATATTTTTGGTACCAACCAAGTATCATTAGATTCTTTGTTAGTTATATTTTCATAGTGTACCTATTTTATGACATAAATCTTTATATTTCTCTCTATATTTTTGGTCAAACTTGAAAATGGTTTGACTTTCCAAGATTCTTGGAATGACTTATAATTTGGAACGGAGGGAGTA

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